Modeltest 3.7
Modeltest : A reliable and efficient application running in command line, which is meant to help users select the best-fit model of nucleotide substitutionModeltest is an advanced and reliable piece of software developed to serve genetics engineers in determining the differences between DNA substitution models using hierarchical hypothesis testing in order to generate the results.
Command line interface
The application is fairly complex, as it is meant for experienced users with a solid background knowledge in genetics as well as computers, specifically since it does not provide users with a GUI, running only through the command line interface, which can make it fairly challenging for novices.Nonetheless, Modeltest does not require installation, so it suffices for users to just drop the executable file onto an open instance of Command Prompt and press the Enter key, which in turn will reveal the program's functions along with a brief explanation of the available commands.Functions and running parameters
Modeltest is meant to work with files generated by PAUP* which contain the genetics information required, as well as files which comprise raw log scores along with parameter estimates for the assessed models.On the opposite end, the utility generates a description of the probability ratio tests that were conducted, and their corresponding P-values, information which is then interpreted and assigned a proper model.The supported models are listed in the command line interface, including JC (Jukes and Cantor), TrNef (Tamura-Nei with equal base frequencies), TIM (Transitional Model), GTR (General Time Reversible), F81 (Felsenstein) and several more.At the same time, users can work with a specific set of functions, exemplified in the main window in order to make them easier to understand and employ. As such, users can determine the debug level ( -d), the alpha level (-a), the number of taxa (-t), activate the LRT calculator mode (-l), determine confidence interval for averaging (-w) or use BIC rather than AIC for all future operations (-b).A comprehensive instrument for determining the proper substitution model
To conclude, Modeltest is an efficient application developed for professionals working in the field of genetics, offering them the means of comparing DNA substitution models, thus helping users decide on which best fits their data.Conclusion
To conclude Modeltest works on Windows operating system(s) and can be easily downloaded using the below download link according to GNU Public License license. Modeltest download file is only 901 KB in size.Modeltest was filed under the Science and Engineering category and was reviewed in softlookup.com and receive 5/5 Score.
Modeltest has been tested by our team against viruses, spyware, adware, trojan, backdoors and was found to be 100% clean. We will recheck Modeltest when updated to assure that it remains clean.
Modeltest user Review
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| Category: | Science and Engineering |
| Publisher: | David Posada |
| Last Updated: | 13/11/2023 |
| Requirements: | Not specified |
| License: | GNU Public License |
| Operating system: | Windows |
| Hits: | 667 |
| File size: | 901 KB |
| Price: | Not specified |
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